J3_8G61_032

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)

Length

26 nucleotides

Bulged bases

8G61|1|L5|C|2470, 8G61|1|L5|A|2472, 8G61|1|L5|G|2475, 8G61|1|L5|C|2504

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G61_032 not in the Motif Atlas

Homologous match to J3_8C3A_053

Geometric discrepancy: 0.5818

The information below is about J3_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34234.1

Basepair signature

cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8G61|1|L5|A|2451
8G61|1|L5|G|2452
8G61|1|L5|A|2453
8G61|1|L5|U|2454
8G61|1|L5|G|2455
8G61|1|L5|G|2456
*
8G61|1|L5|C|2465
8G61|1|L5|G|2466
8G61|1|L5|U|2467
8G61|1|L5|U|2468
8G61|1|L5|C|2469
8G61|1|L5|C|2470
8G61|1|L5|G|2471
8G61|1|L5|A|2472
8G61|1|L5|A|2473
8G61|1|L5|G|2474
8G61|1|L5|G|2475
8G61|1|L5|G|2476
*
8G61|1|L5|C|2501
8G61|1|L5|G|2502
8G61|1|L5|G|2503
8G61|1|L5|C|2504
8G61|1|L5|C|2505
8G61|1|L5|G|2506
8G61|1|L5|A|2507
8G61|1|L5|PSU|2508

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

uL2

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37