J3_8G6J_009
3D structure
- PDB id
- 8G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8G6J|1|L5|U|4117, 8G6J|1|L5|U|4118, 8G6J|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G6J_009 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.3152
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8G6J|1|L5|G|4091
8G6J|1|L5|G|4092
8G6J|1|L5|G|4093
8G6J|1|L5|G|4094
*
8G6J|1|L5|C|4114
8G6J|1|L5|G|4115
8G6J|1|L5|C|4116
8G6J|1|L5|U|4117
8G6J|1|L5|U|4118
8G6J|1|L5|C|4119
8G6J|1|L5|U|4120
8G6J|1|L5|G|4121
8G6J|1|L5|G|4122
8G6J|1|L5|C|4123
8G6J|1|L5|G|4124
8G6J|1|L5|C|4125
8G6J|1|L5|C|4126
8G6J|1|L5|A|4127
8G6J|1|L5|A|4128
8G6J|1|L5|G|4129
*
8G6J|1|L5|C|4155
8G6J|1|L5|G|4156
8G6J|1|L5|A|4157
8G6J|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- uL2
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
Coloring options: