3D structure

PDB id
8G6W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
8G6W|1|a|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G6W_018 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.0611
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8G6W|1|a|C|1298
8G6W|1|a|G|1299
8G6W|1|a|G|1300
8G6W|1|a|A|1301
8G6W|1|a|A|1302
8G6W|1|a|G|1303
*
8G6W|1|a|C|1625
8G6W|1|a|A|1626
8G6W|1|a|G|1627
*
8G6W|1|a|C|1639
8G6W|1|a|A|1640
8G6W|1|a|A|1641
8G6W|1|a|G|1642

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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