J3_8G6W_019

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8G6W|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G6W_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1135

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8G6W|1|a|C|1306
8G6W|1|a|A|1307
8G6W|1|a|A|1308
8G6W|1|a|G|1309
*
8G6W|1|a|C|1605
8G6W|1|a|C|1606
8G6W|1|a|C|1607
8G6W|1|a|A|1608
8G6W|1|a|A|1609
8G6W|1|a|A|1610
8G6W|1|a|C|1611
*
8G6W|1|a|G|1620
8G6W|1|a|U|1621
8G6W|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34