J3_8G6W_027
3D structure
- PDB id
- 8G6W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.02 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8G6W|1|A|C|48, 8G6W|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G6W_027 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0949
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8G6W|1|A|G|46
8G6W|1|A|C|47
8G6W|1|A|C|48
8G6W|1|A|U|49
8G6W|1|A|A|50
8G6W|1|A|A|51
8G6W|1|A|C|52
*
8G6W|1|A|G|359
8G6W|1|A|G|360
8G6W|1|A|G|361
8G6W|1|A|G|362
8G6W|1|A|A|363
8G6W|1|A|A|364
8G6W|1|A|U|365
8G6W|1|A|A|366
8G6W|1|A|U|367
*
8G6W|1|A|A|393
8G6W|1|A|G|394
8G6W|1|A|C|395
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: