J3_8G6W_030

3D structure

PDB id

8G6W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8G6W|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G6W_030 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.162

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8G6W|1|A|C|990
8G6W|1|A|U|991
8G6W|1|A|U|992
8G6W|1|A|G|993
8G6W|1|A|A|994
8G6W|1|A|C|995
8G6W|1|A|A|996
8G6W|1|A|U|997
*
8G6W|1|A|A|1044
8G6W|1|A|C|1045
8G6W|1|A|A|1046
8G6W|1|A|G|1047
*
8G6W|1|A|C|1210
8G6W|1|A|U|1211
8G6W|1|A|U|1212
8G6W|1|A|A|1213
8G6W|1|A|C|1214
8G6W|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14