3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G6Y_017 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.0551
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8G6Y|1|a|G|1424
8G6Y|1|a|G|1425
8G6Y|1|a|G|1426
8G6Y|1|a|A|1427
8G6Y|1|a|C|1428
8G6Y|1|a|G|1429
*
8G6Y|1|a|C|1564
8G6Y|1|a|C|1565
*
8G6Y|1|a|G|1568
8G6Y|1|a|A|1569
8G6Y|1|a|A|1570
8G6Y|1|a|A|1571
8G6Y|1|a|A|1572
8G6Y|1|a|G|1573
8G6Y|1|a|C|1574

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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