J3_8G7Q_003

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7Q_003 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2828

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8G7Q|1|A|G|1055
8G7Q|1|A|G|1056
8G7Q|1|A|A|1057
*
8G7Q|1|A|U|1081
8G7Q|1|A|U|1082
8G7Q|1|A|U|1083
8G7Q|1|A|A|1084
8G7Q|1|A|A|1085
8G7Q|1|A|A|1086
8G7Q|1|A|G|1087
*
8G7Q|1|A|C|1102
8G7Q|1|A|A|1103
8G7Q|1|A|C|1104

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain J

50S ribosomal protein L11