J3_8GLP_002

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

8GLP|1|L5|G|1641

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8GLP_002 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1557

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8GLP|1|L5|U|1531
8GLP|1|L5|G|1532
8GLP|1|L5|A|1533
8GLP|1|L5|A2M|1534
8GLP|1|L5|C|1535
8GLP|1|L5|PSU|1536
8GLP|1|L5|A|1537
*
8GLP|1|L5|U|1622
8GLP|1|L5|A|1623
8GLP|1|L5|G|1624
*
8GLP|1|L5|C|1640
8GLP|1|L5|G|1641
8GLP|1|L5|A|1642
8GLP|1|L5|A|1643

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39