3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
UAUC*GU(PSU)*ACUAAUA
Length
14 nucleotides
Bulged bases
8GLP|1|L5|A|4464, 8GLP|1|L5|U|4465
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8GLP_035 not in the Motif Atlas
Homologous match to J3_8C3A_011
Geometric discrepancy: 0.1547
The information below is about J3_8C3A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

8GLP|1|L5|U|4463
8GLP|1|L5|A|4464
8GLP|1|L5|U|4465
8GLP|1|L5|C|4466
*
8GLP|1|L5|G|4491
8GLP|1|L5|U|4492
8GLP|1|L5|PSU|4493
*
8GLP|1|L5|A|4507
8GLP|1|L5|C|4508
8GLP|1|L5|U|4509
8GLP|1|L5|A|4510
8GLP|1|L5|A|4511
8GLP|1|L5|U|4512
8GLP|1|L5|A|4513

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23

Coloring options:


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