Motif J3_44047.1 Version J3_44047.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-3 | 2-10 | 3-10 | 4-12 | 5-6 | 7-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8GLP_035 | 8GLP | 0.1707 | 2 | L5 | LSU rRNA | U | 4463 | C | 4466 | * | G | 4491 | U | 4492 | PSU | 4493 | * | A | 4507 | C | 4508 | U | 4509 | A | 4510 | A | 4511 | U | 4512 | A | 4513 | cWW | cWW | csS | tsS | cWH | cWW | tWW |
| 2 | J3_8P9A_063 | 8P9A | 0.0602 | 2 | AR | LSU rRNA | U | 2886 | C | 2889 | * | G | 2914 | U | 2915 | U | 2916 | * | A | 2930 | C | 2931 | U | 2932 | A | 2933 | A | 2934 | U | 2935 | A | 2936 | cWW | cWW | csS | tsS | cWH | cWW | tWW |
| 3 | J3_8OI5_022 | 8OI5 | 0.0000 | 2 | 1 | LSU rRNA | U | 2858 | C | 2861 | * | G | 2886 | U | 2887 | U | 2888 | * | A | 2902 | C | 2903 | U | 2904 | A | 2905 | A | 2906 | U | 2907 | A | 2908 | cWW | cWW | csS | tsS | cWH | cWW | tWW |
| 4 | J3_9AXU_023 | 9AXU | 0.0636 | 2 | 2 | LSU rRNA | U | 2981 | C | 2984 | * | G | 3009 | U | 3010 | U | 3011 | * | A | 3025 | C | 3026 | U | 3027 | A | 3028 | A | 3029 | U | 3030 | A | 3031 | cWW | cWW | csS | tsS | cWH | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUC*GUU*ACUAAUA | 3 |
| UAUC*GUPSU*ACUAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*U*CUAAU | 4 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Heat map statistics
- Min 0.06 | Avg 0.09 | Max 0.20
Coloring options: