J3_8GLP_038

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

8GLP|1|L7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8GLP_038 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.0649

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8GLP|1|L7|C|9
8GLP|1|L7|C|10
8GLP|1|L7|A|11
8GLP|1|L7|U|12
8GLP|1|L7|A|13
8GLP|1|L7|C|14
*
8GLP|1|L7|G|65
8GLP|1|L7|G|66
*
8GLP|1|L7|U|109
8GLP|1|L7|G|110

Current chains

Chain L7

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21