J3_8HFR_002
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.103
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8HFR|1|1e|A|369
8HFR|1|1e|U|370
8HFR|1|1e|G|371
8HFR|1|1e|A|372
8HFR|1|1e|A|373
8HFR|1|1e|A|374
8HFR|1|1e|A|375
8HFR|1|1e|G|376
*
8HFR|1|1e|C|403
8HFR|1|1e|G|404
*
8HFR|1|3n|C|19
8HFR|1|3n|U|20
Current chains
- Chain 1e
- 25S ribosomal RNA
- Chain 3n
- 5.8S ribosomal RNA
Nearby chains
- Chain DO
- 60S ribosomal protein L4-A
- Chain YU
- 60S ribosomal protein L26-A
- Chain li
- 60S ribosomal protein L39
- Chain pT
- Probable metalloprotease ARX1
- Chain qJ
- Ribosome biogenesis protein ALB1
- Chain rA
- Nucleolar GTP-binding protein 1
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