J3_8HFR_007

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HFR_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2232

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8HFR|1|1e|G|1230
8HFR|1|1e|A|1231
8HFR|1|1e|C|1232
*
8HFR|1|1e|G|1256
8HFR|1|1e|C|1257
8HFR|1|1e|U|1258
8HFR|1|1e|A|1259
8HFR|1|1e|A|1260
8HFR|1|1e|G|1261
8HFR|1|1e|G|1262
*
8HFR|1|1e|C|1277
8HFR|1|1e|A|1278
8HFR|1|1e|C|1279

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain KM

YEAST 60S ribosomal protein L12-A

Chain Wg

Ribosome assembly factor MRT4

Chain xd

Ribosome biogenesis protein NSA2