J3_8HFR_014

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

8HFR|1|1e|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HFR_014 not in the Motif Atlas

Homologous match to J3_8C3A_010

Geometric discrepancy: 0.0906

The information below is about J3_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8HFR|1|1e|C|2664
8HFR|1|1e|U|2665
8HFR|1|1e|C|2666
*
8HFR|1|1e|G|2690
8HFR|1|1e|A|2691
8HFR|1|1e|A|2692
*
8HFR|1|1e|U|2701
8HFR|1|1e|A|2702
8HFR|1|1e|A|2703
8HFR|1|1e|A|2704
8HFR|1|1e|A|2705
8HFR|1|1e|G|2706

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain 2f

5S ribosomal RNA; 5S rRNA

Chain Ez

60S ribosomal protein L5

Chain Jy

60S ribosomal protein L11-A

Chain Tl

60S ribosomal protein L21-A