J3_8HL2_009

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUCUA*UAG*CUAG

Length

14 nucleotides

Bulged bases

8HL2|1|A23S|U|819, 8HL2|1|A23S|U|928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL2_009 not in the Motif Atlas

Homologous match to J3_4V9F_002

Geometric discrepancy: 0.1666

The information below is about J3_4V9F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|C|816
8HL2|1|A23S|G|817
8HL2|1|A23S|A|818
8HL2|1|A23S|U|819
8HL2|1|A23S|C|820
8HL2|1|A23S|U|821
8HL2|1|A23S|A|822
*
8HL2|1|A23S|U|909
8HL2|1|A23S|A|910
8HL2|1|A23S|G|911
*
8HL2|1|A23S|C|927
8HL2|1|A23S|U|928
8HL2|1|A23S|A|929
8HL2|1|A23S|G|930

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L15E

50S ribosomal protein L15e

Chain L37E

50S ribosomal protein L37e