J3_8HL2_012

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CUAGAAC*GUG

Length

14 nucleotides

Bulged bases

8HL2|1|A23S|G|1762, 8HL2|1|A23S|A|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL2_012 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.3413

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.2

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8HL2|1|A23S|C|1450
8HL2|1|A23S|A|1451
8HL2|1|A23S|A|1452
8HL2|1|A23S|G|1453
*
8HL2|1|A23S|C|1759
8HL2|1|A23S|U|1760
8HL2|1|A23S|A|1761
8HL2|1|A23S|G|1762
8HL2|1|A23S|A|1763
8HL2|1|A23S|A|1764
8HL2|1|A23S|C|1765
*
8HL2|1|A23S|G|1774
8HL2|1|A23S|U|1775
8HL2|1|A23S|G|1776

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L34E

50S ribosomal protein L34e

Chain L37E

50S ribosomal protein L37e

Chain L39E

50S ribosomal protein L39e