J3_8HL2_015

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUG*CUAAC*GAACAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL2_015 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.154

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8HL2|1|A23S|U|2220
8HL2|1|A23S|U|2221
8HL2|1|A23S|G|2222
*
8HL2|1|A23S|C|2325
8HL2|1|A23S|U|2326
8HL2|1|A23S|A|2327
8HL2|1|A23S|A|2328
8HL2|1|A23S|C|2329
*
8HL2|1|A23S|G|2344
8HL2|1|A23S|A|2345
8HL2|1|A23S|A|2346
8HL2|1|A23S|C|2347
8HL2|1|A23S|A|2348
8HL2|1|A23S|A|2349

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L15E

50S ribosomal protein L15e