J3_8HL2_016
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8HL2|1|A23S|A|2456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HL2_016 not in the Motif Atlas
- Homologous match to J3_4V9F_008
- Geometric discrepancy: 0.1621
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
8HL2|1|A23S|C|2417
8HL2|1|A23S|U|2418
8HL2|1|A23S|C|2419
*
8HL2|1|A23S|G|2443
8HL2|1|A23S|A|2444
8HL2|1|A23S|G|2445
*
8HL2|1|A23S|C|2454
8HL2|1|A23S|A|2455
8HL2|1|A23S|A|2456
8HL2|1|A23S|A|2457
8HL2|1|A23S|A|2458
8HL2|1|A23S|G|2459
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AL5P
- 50S ribosomal protein L5
- Chain APTN
- Transfer RNA; tRNA
- Chain L18P
- 50S ribosomal protein L18
- Chain L21E
- 50S ribosomal protein L21e
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