J3_8HL2_029

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GG*CUGAAAAGAAC*GAGUGCAAAGAGCC

Length

27 nucleotides

Bulged bases

8HL2|1|A23S|A|548, 8HL2|1|A23S|G|551

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL2_029 not in the Motif Atlas

Geometric match to J3_4WF9_011

Geometric discrepancy: 0.3897

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

8HL2|1|A23S|G|21
8HL2|1|A23S|G|22
*
8HL2|1|A23S|C|518
8HL2|1|A23S|U|519
8HL2|1|A23S|G|520
8HL2|1|A23S|A|521
8HL2|1|A23S|A|522
8HL2|1|A23S|A|523
8HL2|1|A23S|A|524
8HL2|1|A23S|G|525
8HL2|1|A23S|A|526
8HL2|1|A23S|A|527
8HL2|1|A23S|C|528
*
8HL2|1|A23S|G|540
8HL2|1|A23S|A|541
8HL2|1|A23S|G|542
8HL2|1|A23S|U|543
8HL2|1|A23S|G|544
8HL2|1|A23S|C|545
8HL2|1|A23S|A|546
8HL2|1|A23S|A|547
8HL2|1|A23S|A|548
8HL2|1|A23S|G|549
8HL2|1|A23S|A|550
8HL2|1|A23S|G|551
8HL2|1|A23S|C|552
8HL2|1|A23S|C|553

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L22P

50S ribosomal protein L22

Chain L24P

50S ribosomal protein L24

Chain L39E

50S ribosomal protein L39e

Chain L46A

Conserved protein