J3_8HL2_030

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUCG*CGAUAGCAAACUAAGUAC*GGAAAG

Length

28 nucleotides

Bulged bases

8HL2|1|A23S|C|25, 8HL2|1|A23S|U|491, 8HL2|1|A23S|U|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL2_030 not in the Motif Atlas

Homologous match to J3_4V9F_013

Geometric discrepancy: 0.367

The information below is about J3_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

8HL2|1|A23S|C|23
8HL2|1|A23S|U|24
8HL2|1|A23S|C|25
8HL2|1|A23S|G|26
*
8HL2|1|A23S|C|488
8HL2|1|A23S|G|489
8HL2|1|A23S|A|490
8HL2|1|A23S|U|491
8HL2|1|A23S|A|492
8HL2|1|A23S|G|493
8HL2|1|A23S|C|494
8HL2|1|A23S|A|495
8HL2|1|A23S|A|496
8HL2|1|A23S|A|497
8HL2|1|A23S|C|498
8HL2|1|A23S|U|499
8HL2|1|A23S|A|500
8HL2|1|A23S|A|501
8HL2|1|A23S|G|502
8HL2|1|A23S|U|503
8HL2|1|A23S|A|504
8HL2|1|A23S|C|505
*
8HL2|1|A23S|G|512
8HL2|1|A23S|G|513
8HL2|1|A23S|A|514
8HL2|1|A23S|A|515
8HL2|1|A23S|A|516
8HL2|1|A23S|G|517

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L24P

50S ribosomal protein L24

Chain L37E

50S ribosomal protein L37e

Chain L39E

50S ribosomal protein L39e