J3_8HL2_036
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GCC*GCCUAGCGAACG*CAUGAC
- Length
- 21 nucleotides
- Bulged bases
- 8HL2|1|A23S|A|2513, 8HL2|1|A23S|C|2515, 8HL2|1|A23S|A|2552
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HL2_036 not in the Motif Atlas
- Geometric match to J3_5TBW_067
- Geometric discrepancy: 0.1875
- The information below is about J3_5TBW_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8HL2|1|A23S|G|2404
8HL2|1|A23S|C|2405
8HL2|1|A23S|C|2406
*
8HL2|1|A23S|G|2509
8HL2|1|A23S|C|2510
8HL2|1|A23S|C|2511
8HL2|1|A23S|U|2512
8HL2|1|A23S|A|2513
8HL2|1|A23S|G|2514
8HL2|1|A23S|C|2515
8HL2|1|A23S|G|2516
8HL2|1|A23S|A|2517
8HL2|1|A23S|A|2518
8HL2|1|A23S|C|2519
8HL2|1|A23S|G|2520
*
8HL2|1|A23S|C|2548
8HL2|1|A23S|A|2549
8HL2|1|A23S|U|2550
8HL2|1|A23S|G|2551
8HL2|1|A23S|A|2552
8HL2|1|A23S|C|2553
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AETN
- Transfer RNA; tRNA
- Chain L15P
- 50S ribosomal protein L15
- Chain L21E
- 50S ribosomal protein L21e
- Chain L44E
- 50S ribosomal protein L44e
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