J3_8HL4_018

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CACC*GUAG*CGUUAAAG

Length

16 nucleotides

Bulged bases

8HL4|1|A23S|A|2642, 8HL4|1|A23S|C|2643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL4_018 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.1972

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8HL4|1|A23S|C|2641
8HL4|1|A23S|A|2642
8HL4|1|A23S|C|2643
8HL4|1|A23S|C|2644
*
8HL4|1|A23S|G|2669
8HL4|1|A23S|U|2670
8HL4|1|A23S|A|2671
8HL4|1|A23S|G|2672
*
8HL4|1|A23S|C|2684
8HL4|1|A23S|G|2685
8HL4|1|A23S|U|2686
8HL4|1|A23S|U|2687
8HL4|1|A23S|A|2688
8HL4|1|A23S|A|2689
8HL4|1|A23S|A|2690
8HL4|1|A23S|G|2691

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L14P

50S ribosomal protein L14