J3_8HL4_034

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CGAAC*GGCCAUAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8HL4|1|A23S|U|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HL4_034 not in the Motif Atlas

Geometric match to J3_8VTW_041

Geometric discrepancy: 0.2486

The information below is about J3_8VTW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8HL4|1|A23S|C|339
8HL4|1|A23S|G|340
8HL4|1|A23S|A|341
8HL4|1|A23S|A|342
8HL4|1|A23S|C|343
*
8HL4|1|A23S|G|359
8HL4|1|A23S|G|360
8HL4|1|A23S|C|361
8HL4|1|A23S|C|362
8HL4|1|A23S|A|363
8HL4|1|A23S|U|364
8HL4|1|A23S|A|365
8HL4|1|A23S|G|366
8HL4|1|A23S|A|367
8HL4|1|A23S|G|368
*
8HL4|1|A23S|C|380
8HL4|1|A23S|G|381
8HL4|1|A23S|U|382
8HL4|1|A23S|A|383
8HL4|1|A23S|G|384

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L24P

50S ribosomal protein L24