J3_8HSP_020

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8HSP|1|A|C|48, 8HSP|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HSP_020 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0702

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8HSP|1|A|G|46
8HSP|1|A|C|47
8HSP|1|A|C|48
8HSP|1|A|U|49
8HSP|1|A|A|50
8HSP|1|A|A|51
8HSP|1|A|C|52
*
8HSP|1|A|G|359
8HSP|1|A|G|360
8HSP|1|A|G|361
8HSP|1|A|G|362
8HSP|1|A|A|363
8HSP|1|A|A|364
8HSP|1|A|U|365
8HSP|1|A|A|366
8HSP|1|A|U|367
*
8HSP|1|A|A|393
8HSP|1|A|G|394
8HSP|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16