J3_8HSP_033

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8HSP_033 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0625

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8HSP|1|a|G|1424
8HSP|1|a|G|1425
8HSP|1|a|G|1426
8HSP|1|a|A|1427
8HSP|1|a|C|1428
8HSP|1|a|G|1429
*
8HSP|1|a|C|1564
8HSP|1|a|C|1565
*
8HSP|1|a|G|1568
8HSP|1|a|A|1569
8HSP|1|a|A|1570
8HSP|1|a|A|1571
8HSP|1|a|A|1572
8HSP|1|a|G|1573
8HSP|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2