3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
8HU1|1|A|U|871, 8HU1|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8HU1_001 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0707
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

8HU1|1|A|C|826
8HU1|1|A|U|827
8HU1|1|A|U|828
8HU1|1|A|G|829
*
8HU1|1|A|C|857
8HU1|1|A|G|858
8HU1|1|A|G|859
8HU1|1|A|A|860
8HU1|1|A|G|861
*
8HU1|1|A|C|868
8HU1|1|A|G|869
8HU1|1|A|U|870
8HU1|1|A|U|871
8HU1|1|A|A|872
8HU1|1|A|A|873
8HU1|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain H
30S ribosomal protein S8
Chain U
30S ribosomal protein S21

Coloring options:


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