J3_8I9V_005
3D structure
- PDB id
- 8I9V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8I9V|1|C1|A|2845, 8I9V|1|C1|U|2846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9V_005 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.2802
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8I9V|1|C1|U|2844
8I9V|1|C1|A|2845
8I9V|1|C1|U|2846
8I9V|1|C1|C|2847
*
8I9V|1|C1|G|2872
8I9V|1|C1|U|2873
8I9V|1|C1|U|2874
*
8I9V|1|C1|A|2888
8I9V|1|C1|C|2889
8I9V|1|C1|U|2890
8I9V|1|C1|A|2891
8I9V|1|C1|A|2892
8I9V|1|C1|U|2893
8I9V|1|C1|A|2894
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain CO
- DUF2423 domain-containing protein
- Chain Cb
- ATP-dependent RNA helicase DBP10
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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