J3_8I9W_013
3D structure
- PDB id
- 8I9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGAAG*CAUUCGA
- Length
- 14 nucleotides
- Bulged bases
- 8I9W|1|C1|A|1047, 8I9W|1|C1|U|1076, 8I9W|1|C1|U|1077
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9W_013 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.3792
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8I9W|1|C1|U|967
8I9W|1|C1|U|968
*
8I9W|1|C1|A|1044
8I9W|1|C1|G|1045
8I9W|1|C1|A|1046
8I9W|1|C1|A|1047
8I9W|1|C1|G|1048
*
8I9W|1|C1|C|1074
8I9W|1|C1|A|1075
8I9W|1|C1|U|1076
8I9W|1|C1|U|1077
8I9W|1|C1|C|1078
8I9W|1|C1|G|1079
8I9W|1|C1|A|1080
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CL
- Putative GTP binding protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
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