J3_8I9X_023
3D structure
- PDB id
- 8I9X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AC*GAUAAGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8I9X|1|C2|U|60, 8I9X|1|C2|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9X_023 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0893
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8I9X|1|C2|A|44
8I9X|1|C2|C|45
*
8I9X|1|C2|G|58
8I9X|1|C2|A|59
8I9X|1|C2|U|60
8I9X|1|C2|A|61
8I9X|1|C2|A|62
8I9X|1|C2|G|63
8I9X|1|C2|U|64
*
8I9X|1|C2|A|96
8I9X|1|C2|A|97
8I9X|1|C2|U|98
8I9X|1|C2|C|99
8I9X|1|C2|U|100
Current chains
- Chain C2
- RNA (319-MER)
Nearby chains
- Chain CR
- Nucleolar protein 16
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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