J3_8I9Y_019
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CG*CAACU*GG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9Y_019 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.2122
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8I9Y|1|C1|C|1610
8I9Y|1|C1|G|1611
*
8I9Y|1|C1|C|1620
8I9Y|1|C1|A|1621
8I9Y|1|C1|A|1622
8I9Y|1|C1|C|1623
8I9Y|1|C1|U|1624
*
8I9Y|1|C1|G|1789
8I9Y|1|C1|G|1790
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain CJ
- Pescadillo homolog
- Chain CM
- 60S ribosomal protein l7-like protein
- Chain LZ
- 60S ribosomal protein L27
- Chain Lg
- Ribosomal protein l34-like protein
Coloring options: