J3_8I9Z_006
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8I9Z|1|C1|U|1819, 8I9Z|1|C1|A|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9Z_006 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.1012
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8I9Z|1|C1|G|1470
8I9Z|1|C1|A|1471
8I9Z|1|C1|A|1472
8I9Z|1|C1|A|1473
*
8I9Z|1|C1|U|1816
8I9Z|1|C1|C|1817
8I9Z|1|C1|A|1818
8I9Z|1|C1|U|1819
8I9Z|1|C1|A|1820
8I9Z|1|C1|A|1821
8I9Z|1|C1|C|1822
*
8I9Z|1|C1|G|1831
8I9Z|1|C1|U|1832
8I9Z|1|C1|C|1833
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CY
- Putative NOC2 family protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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