J3_8IFB_012

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8IFB|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFB_012 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1168

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8IFB|1|a|C|1306
8IFB|1|a|A|1307
8IFB|1|a|A|1308
8IFB|1|a|G|1309
*
8IFB|1|a|C|1605
8IFB|1|a|C|1606
8IFB|1|a|C|1607
8IFB|1|a|A|1608
8IFB|1|a|A|1609
8IFB|1|a|A|1610
8IFB|1|a|C|1611
*
8IFB|1|a|G|1620
8IFB|1|a|U|1621
8IFB|1|a|G|1622

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34