J3_8IFC_011

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFC_011 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.069

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8IFC|1|a|C|1298
8IFC|1|a|G|1299
8IFC|1|a|G|1300
8IFC|1|a|A|1301
8IFC|1|a|A|1302
8IFC|1|a|G|1303
*
8IFC|1|a|C|1625
8IFC|1|a|A|1626
8IFC|1|a|G|1627
*
8IFC|1|a|C|1639
8IFC|1|a|A|1640
8IFC|1|a|A|1641
8IFC|1|a|G|1642

Current chains

Chain a

23S ribosomal RNA

Nearby chains