3D structure

PDB id
8IFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-added human 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.57 Å

Loop

Sequence
UCGGUC*GGAGU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8IFE_029 not in the Motif Atlas
Homologous match to J3_8P9A_055
Geometric discrepancy: 0.138
The information below is about J3_8P9A_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_94309.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
9

Unit IDs

8IFE|1|1A|U|2440
8IFE|1|1A|C|2441
8IFE|1|1A|G|2442
8IFE|1|1A|G|2443
8IFE|1|1A|U|2444
8IFE|1|1A|C|2445
*
8IFE|1|1A|G|2515
8IFE|1|1A|G|2516
8IFE|1|1A|A|2517
8IFE|1|1A|G|2518
8IFE|1|1A|U|2519
*
8IFE|1|1A|A|2536
8IFE|1|1A|A|2537

Current chains

Chain 1A
28S ribosomal RNA

Nearby chains

Chain 1C
5.8S ribosomal RNA; 5.8S rRNA
Chain 2R
60S ribosomal protein L23a
Chain 2a
60S ribosomal protein L34
Chain 2e
60S ribosomal protein L38
Chain 2f
60S ribosomal protein L39

Coloring options:


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