J3_8IFE_031

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFE_031 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1912

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8IFE|1|1A|U|2575
8IFE|1|1A|G|2576
*
8IFE|1|1A|C|2585
8IFE|1|1A|G|2586
8IFE|1|1A|A|2587
8IFE|1|1A|C|2588
8IFE|1|1A|C|2589
*
8IFE|1|1A|G|2756
8IFE|1|1A|A|2757

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2T

60S ribosomal protein L27

Chain 2a

60S ribosomal protein L34