3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
8INF|1|2|A|4464, 8INF|1|2|U|4465
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8INF_010 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.1073
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

8INF|1|2|U|4463
8INF|1|2|A|4464
8INF|1|2|U|4465
8INF|1|2|C|4466
*
8INF|1|2|G|4491
8INF|1|2|U|4492
8INF|1|2|U|4493
*
8INF|1|2|A|4507
8INF|1|2|C|4508
8INF|1|2|U|4509
8INF|1|2|A|4510
8INF|1|2|A|4511
8INF|1|2|U|4512
8INF|1|2|A|4513

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain A
G Protein Nucleolar 2
Chain B
60S ribosomal protein L3
Chain T
Leydig cell tumor 10 kDa protein homolog
Chain V
60S ribosomal protein L13a
Chain e
60S ribosomal protein L23
Chain z
Protein LLP homolog

Coloring options:


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