3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UCGGUC*GGAGU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8INF_019 not in the Motif Atlas
Homologous match to J3_8P9A_055
Geometric discrepancy: 0.1656
The information below is about J3_8P9A_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_31965.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

8INF|1|2|U|2440
8INF|1|2|C|2441
8INF|1|2|G|2442
8INF|1|2|G|2443
8INF|1|2|U|2444
8INF|1|2|C|2445
*
8INF|1|2|G|2515
8INF|1|2|G|2516
8INF|1|2|A|2517
8INF|1|2|G|2518
8INF|1|2|U|2519
*
8INF|1|2|A|2536
8INF|1|2|A|2537

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain F
60S ribosomal protein L34
Chain O
60S ribosomal protein L38
Chain P
60S ribosomal protein L39
Chain v
Pescadillo homolog

Coloring options:


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