3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
AC*GAGAAUU*ACACU
Length
14 nucleotides
Bulged bases
8INF|1|8|A|62
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8INF_024 not in the Motif Atlas
Homologous match to J3_8C3A_060
Geometric discrepancy: 0.1946
The information below is about J3_8C3A_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38265.2
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F
Number of instances in this motif group
8

Unit IDs

8INF|1|8|A|44
8INF|1|8|C|45
*
8INF|1|8|G|58
8INF|1|8|A|59
8INF|1|8|G|60
8INF|1|8|A|61
8INF|1|8|A|62
8INF|1|8|U|63
8INF|1|8|U|64
*
8INF|1|8|A|95
8INF|1|8|C|96
8INF|1|8|A|97
8INF|1|8|C|98
8INF|1|8|U|99

Current chains

Chain 8
5.8S rRNA

Nearby chains

Chain 2
Large subunit ribosomal RNA; LSU rRNA
Chain H
60S ribosomal protein L35
Chain M
60S ribosomal protein L37
Chain P
60S ribosomal protein L39
Chain g
60S ribosomal protein L23a

Coloring options:


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