J3_8IP8_001
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGCUUGAGAA*UAGUCUGGAG*CAACG
- Length
- 26 nucleotides
- Bulged bases
- 8IP8|1|RB|A|119, 8IP8|1|RB|G|120, 8IP8|1|RB|G|155
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.3905
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8IP8|1|RB|C|112
8IP8|1|RB|A|113
8IP8|1|RB|G|114
8IP8|1|RB|C|115
8IP8|1|RB|U|116
8IP8|1|RB|U|117
8IP8|1|RB|G|118
8IP8|1|RB|A|119
8IP8|1|RB|G|120
8IP8|1|RB|A|121
8IP8|1|RB|A|122
*
8IP8|1|RB|U|148
8IP8|1|RB|A|149
8IP8|1|RB|G|150
8IP8|1|RB|U|151
8IP8|1|RB|C|152
8IP8|1|RB|U|153
8IP8|1|RB|G|154
8IP8|1|RB|G|155
8IP8|1|RB|A|156
8IP8|1|RB|G|157
*
8IP8|1|RB|C|261
8IP8|1|RB|A|262
8IP8|1|RB|A|263
8IP8|1|RB|C|264
8IP8|1|RB|G|265
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein eL8
- Chain AB
- 60S ribosomal protein eL36
- Chain BB
- 60S ribosomal protein uL29
- Chain HA
- 60S ribosomal protein eL15
- Chain KB
- 60S ribosomal protein eL13
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