J3_8IP8_003
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8IP8|1|RB|A|820, 8IP8|1|RB|G|927
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_003 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.0651
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|U|817
8IP8|1|RB|G|818
8IP8|1|RB|A|819
8IP8|1|RB|A|820
8IP8|1|RB|C|821
8IP8|1|RB|U|822
8IP8|1|RB|A|823
*
8IP8|1|RB|U|908
8IP8|1|RB|A|909
8IP8|1|RB|G|910
*
8IP8|1|RB|C|926
8IP8|1|RB|G|927
8IP8|1|RB|A|928
8IP8|1|RB|A|929
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain HA
- 60S ribosomal protein eL15
- Chain UA
- 60S ribosomal protein eL37
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