J3_8IP8_004
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGG*CGAAG*UCUGAC
- Length
- 15 nucleotides
- Bulged bases
- 8IP8|1|RB|A|899
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_004 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.1485
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8IP8|1|RB|G|831
8IP8|1|RB|C|832
8IP8|1|RB|G|833
8IP8|1|RB|G|834
*
8IP8|1|RB|C|866
8IP8|1|RB|G|867
8IP8|1|RB|A|868
8IP8|1|RB|A|869
8IP8|1|RB|G|870
*
8IP8|1|RB|U|895
8IP8|1|RB|C|896
8IP8|1|RB|U|897
8IP8|1|RB|G|898
8IP8|1|RB|A|899
8IP8|1|RB|C|900
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DA
- 60S ribosomal protein uL2
- Chain GB
- 60S ribosomal protein eL43
- Chain LA
- 60S ribosomal protein eL19
- Chain PB
- 60S ribosomal protein eL34
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