J3_8IP8_005

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGAG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8IP8|1|RB|A|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IP8_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.2126

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8IP8|1|RB|C|1482
8IP8|1|RB|G|1483
8IP8|1|RB|A|1484
8IP8|1|RB|A|1485
8IP8|1|RB|G|1486
8IP8|1|RB|A|1487
8IP8|1|RB|G|1488
*
8IP8|1|RB|C|1853
8IP8|1|RB|A|1854
8IP8|1|RB|A|1855
*
8IP8|1|RB|U|1867
8IP8|1|RB|C|1868
8IP8|1|RB|U|1869
8IP8|1|RB|G|1870

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain PB

60S ribosomal protein eL34