J3_8IP8_018
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_018 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3442
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|aa|U|1287
8IP8|1|aa|C|1288
8IP8|1|aa|U|1289
8IP8|1|aa|U|1290
8IP8|1|aa|A|1291
8IP8|1|aa|G|1292
*
8IP8|1|aa|C|1331
8IP8|1|aa|G|1332
8IP8|1|aa|A|1333
8IP8|1|aa|G|1334
8IP8|1|aa|A|1335
8IP8|1|aa|C|1336
*
8IP8|1|aa|G|1425
8IP8|1|aa|C|1426
8IP8|1|aa|A|1427
8IP8|1|aa|A|1428
8IP8|1|aa|U|1429
8IP8|1|aa|A|1430
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain fb
- 40S ribosomal protein uS5
- Chain ia
- 40S ribosomal protein uS3
- Chain la
- 40S ribosomal protein uS9
- Chain ma
- 40S ribosomal protein uS10
- Chain qa
- 40S ribosomal protein eS17
- Chain wa
- 40S ribosomal protein uS14
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