J3_8IP8_019
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8IP8|1|aa|U|1419, 8IP8|1|aa|U|1420
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_019 not in the Motif Atlas
- Geometric match to J3_4V88_040
- Geometric discrepancy: 0.1431
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IP8|1|aa|A|1340
8IP8|1|aa|G|1341
8IP8|1|aa|C|1342
*
8IP8|1|aa|G|1392
8IP8|1|aa|G|1393
8IP8|1|aa|A|1394
8IP8|1|aa|C|1395
*
8IP8|1|aa|G|1418
8IP8|1|aa|U|1419
8IP8|1|aa|U|1420
8IP8|1|aa|U|1421
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ha
- RACK1
- Chain ka
- 40S ribosomal protein uS7
- Chain la
- 40S ribosomal protein uS9
- Chain ma
- 40S ribosomal protein uS10
- Chain qa
- 40S ribosomal protein eS17
- Chain wa
- 40S ribosomal protein uS14
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