J3_8IP8_023
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8IP8|1|RB|U|341, 8IP8|1|RB|A|349, 8IP8|1|SB|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_023 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0562
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8IP8|1|RB|C|338
8IP8|1|RB|G|339
8IP8|1|RB|A|340
8IP8|1|RB|U|341
8IP8|1|RB|A|342
8IP8|1|RB|G|343
8IP8|1|RB|C|344
8IP8|1|RB|G|345
8IP8|1|RB|A|346
8IP8|1|RB|A|347
8IP8|1|RB|C|348
8IP8|1|RB|A|349
8IP8|1|RB|A|350
8IP8|1|RB|G|351
8IP8|1|RB|U|352
8IP8|1|RB|A|353
8IP8|1|RB|C|354
*
8IP8|1|RB|G|361
8IP8|1|RB|G|362
8IP8|1|RB|A|363
8IP8|1|RB|A|364
8IP8|1|RB|A|365
8IP8|1|RB|G|366
*
8IP8|1|SB|C|21
8IP8|1|SB|U|22
8IP8|1|SB|C|23
8IP8|1|SB|G|24
Current chains
- Chain RB
- 60S ribosomal RNA
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain EB
- 60S ribosomal protein uL4
- Chain PA
- 60S ribosomal protein uL24
- Chain UA
- 60S ribosomal protein eL37
- Chain VA
- 60S ribosomal protein eL39
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