J3_8IP8_025
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAGGAC*GAGUCAAAGAGUGCU*AU
- Length
- 28 nucleotides
- Bulged bases
- 8IP8|1|RB|G|396, 8IP8|1|RB|G|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_025 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.33
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8IP8|1|RB|A|367
8IP8|1|RB|U|368
8IP8|1|RB|G|369
8IP8|1|RB|A|370
8IP8|1|RB|A|371
8IP8|1|RB|A|372
8IP8|1|RB|A|373
8IP8|1|RB|G|374
8IP8|1|RB|G|375
8IP8|1|RB|A|376
8IP8|1|RB|C|377
*
8IP8|1|RB|G|388
8IP8|1|RB|A|389
8IP8|1|RB|G|390
8IP8|1|RB|U|391
8IP8|1|RB|C|392
8IP8|1|RB|A|393
8IP8|1|RB|A|394
8IP8|1|RB|A|395
8IP8|1|RB|G|396
8IP8|1|RB|A|397
8IP8|1|RB|G|398
8IP8|1|RB|U|399
8IP8|1|RB|G|400
8IP8|1|RB|C|401
8IP8|1|RB|U|402
*
8IP8|1|SB|A|19
8IP8|1|SB|U|20
Current chains
- Chain RB
- 60S ribosomal RNA
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain EB
- 60S ribosomal protein uL4
- Chain MA
- 60S ribosomal protein uL22
- Chain PA
- 60S ribosomal protein uL24
- Chain VA
- 60S ribosomal protein eL39
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