J3_8IP8_031
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGAUC*GGAAU*AG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_031 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1227
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8IP8|1|RB|C|1529
8IP8|1|RB|C|1530
8IP8|1|RB|G|1531
8IP8|1|RB|A|1532
8IP8|1|RB|U|1533
8IP8|1|RB|C|1534
*
8IP8|1|RB|G|1588
8IP8|1|RB|G|1589
8IP8|1|RB|A|1590
8IP8|1|RB|A|1591
8IP8|1|RB|U|1592
*
8IP8|1|RB|A|1610
8IP8|1|RB|G|1611
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain NA
- 60S ribosomal protein uL23
- Chain NB
- 60S ribosomal protein eL38
- Chain PB
- 60S ribosomal protein eL34
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain VA
- 60S ribosomal protein eL39
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