J3_8IP8_035
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8IP8|1|RB|C|2757, 8IP8|1|RB|U|2794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_035 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0558
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8IP8|1|RB|G|2648
8IP8|1|RB|U|2649
8IP8|1|RB|C|2650
*
8IP8|1|RB|G|2751
8IP8|1|RB|C|2752
8IP8|1|RB|C|2753
8IP8|1|RB|U|2754
8IP8|1|RB|A|2755
8IP8|1|RB|U|2756
8IP8|1|RB|C|2757
8IP8|1|RB|G|2758
8IP8|1|RB|A|2759
8IP8|1|RB|U|2760
8IP8|1|RB|C|2761
8IP8|1|RB|C|2762
*
8IP8|1|RB|G|2790
8IP8|1|RB|G|2791
8IP8|1|RB|U|2792
8IP8|1|RB|G|2793
8IP8|1|RB|U|2794
8IP8|1|RB|C|2795
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain IA
- 60S ribosomal protein uL15
- Chain JA
- 60S ribosomal protein eL18
- Chain WA
- 60S ribosomal protein eL42
- Chain dl
- CCA end of E-tRNA
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