J3_8IP8_039
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8IP8|1|TB|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_039 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1866
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8IP8|1|TB|U|9
8IP8|1|TB|C|10
8IP8|1|TB|A|11
8IP8|1|TB|U|12
8IP8|1|TB|A|13
8IP8|1|TB|C|14
*
8IP8|1|TB|G|65
8IP8|1|TB|G|66
*
8IP8|1|TB|U|109
8IP8|1|TB|G|110
Current chains
- Chain TB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain HB
- 60S ribosomal protein uL16
- Chain KA
- 60S ribosomal protein uL18
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
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